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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
total RNA-seq
28
ChIP-seq
19
ATAC-seq
6
MeRIP-seq
2
Capture-C
2
DNase-seq
2
Hi-C
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
34
Transcription
28
DNA binding
21
DNA accessibility
2
3D chromatin structure
Target of assay
19
histone
19
histone modification
11
control
10
broad histone mark
9
narrow histone mark
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
21
May, 2021
17
October, 2019
16
November, 2019
6
November, 2020
5
March, 2020
2
August, 2021
1
February, 2023
Available data
65
bam
58
bigWig
35
tsv
22
bed narrowPeak
8
bigBed narrowPeak
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
Organism
93
Homo sapiens
Biosample type
520
tissue
437
primary cell
94
cell line
24
in vitro differentiated cells
Organ
401
liver
92
pancreas
79
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
90
AMP
4
T1D
Genome assembly (visualization)
60
hg19
57
GRCh38
Lab
88
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
76
inconsistent ontology term
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
94 results
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total RNA-seq
ChIP-seq
ATAC-seq
MeRIP-seq
Capture-C
DNase-seq
Hi-C
CRISPR genome editing followed by sgRNA sequencing
cell line
EndoC_BH1
33
15
19
6
2
1
1
Panc1
13
1
1
glomerular visceral epithelial cell
1
1
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