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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
total RNA-seq
27
ChIP-seq
6
MeRIP-seq
3
ATAC-seq
2
Capture-C
2
DNase-seq
2
Hi-C
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
30
Transcription
27
DNA binding
5
DNA accessibility
2
3D chromatin structure
Target of assay
18
histone
18
histone modification
11
control
10
broad histone mark
8
narrow histone mark
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
May, 2021
17
October, 2019
16
November, 2019
6
November, 2020
5
March, 2020
2
August, 2021
1
February, 2023
Available data
60
bam
53
bigWig
31
tsv
21
bed narrowPeak
8
bigBed narrowPeak
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
Organism
72
Homo sapiens
Biosample type
483
tissue
437
primary cell
73
cell line
19
in vitro differentiated cells
Organ
401
liver
71
pancreas
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
58
epithelium
19
kidney
8
embryo
1
mammary gland
Project
70
AMP
3
T1D
Genome assembly (visualization)
55
hg19
52
GRCh38
Lab
67
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
55
inconsistent ontology term
Audit category:
1
inconsistent assembly
month_released!
May, 2021
BIOSAMPLE
ASSAY
73 results
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total RNA-seq
ChIP-seq
MeRIP-seq
ATAC-seq
Capture-C
DNase-seq
Hi-C
CRISPR genome editing followed by sgRNA sequencing
cell line
EndoC_BH1
29
14
6
3
2
1
1
Panc1
13
1
1
glomerular visceral epithelial cell
1
1
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