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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
263
total RNA-seq
78
ChIP-seq
26
ATAC-seq
7
DNase-seq
6
single cell RNA-seq
4
WGBS
2
small RNA-seq
Assay category
271
Transcription
78
DNA binding
33
DNA accessibility
4
DNA methylation
Target of assay
59
histone
59
histone modification
33
broad histone mark
26
narrow histone mark
17
transcription factor
8
RNA binding protein
2
control
Date released
123
August, 2017
116
July, 2018
40
October, 2018
38
November, 2019
36
May, 2021
6
April, 2018
6
November, 2018
5
October, 2017
4
July, 2019
4
June, 2019
3
March, 2020
2
March, 2019
2
September, 2017
1
May, 2019
Available data
383
bam
363
bigWig
271
tsv
170
fastq
97
bed narrowPeak
60
bigBed narrowPeak
27
bed bed3+
13
bed broadPeak
6
bigBed broadPeak
6
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
Organism
380
Homo sapiens
Biosample type
386
tissue
256
primary cell
57
cell line
20
in vitro differentiated cells
Organ
480
connective tissue
422
adipose tissue
386
pancreas
238
liver
203
brain
191
heart
165
kidney
105
blood vessel
105
vasculature
96
limb
66
bone element
62
artery
42
musculature of body
31
nerve
18
ureter
16
spleen
8
skeleton
3
eye
1
pituitary gland
0
epithelium
Project
384
AMP
2
T1D
Genome assembly (visualization)
425
hg19
386
GRCh38
Lab
383
AMP-T2D consortium
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
386 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
small RNA-seq
tissue
islet of Langerhans
260
25
22
1
6
body of pancreas
2
26
4
4
2
2
pancreas
1
13
2
2
endocrine pancreas
14
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