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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
269
total RNA-seq
97
ChIP-seq
42
ATAC-seq
7
DNase-seq
6
single cell RNA-seq
4
WGBS
2
FAIRE-seq
2
small RNA-seq
Assay category
277
Transcription
97
DNA binding
51
DNA accessibility
4
DNA methylation
Target of assay
59
histone
59
histone modification
33
broad histone mark
26
narrow histone mark
21
control
17
transcription factor
8
RNA binding protein
Date released
127
August, 2017
116
July, 2018
51
October, 2018
38
November, 2019
36
May, 2021
24
May, 2022
7
November, 2018
6
April, 2018
6
September, 2017
4
July, 2019
4
June, 2019
4
October, 2017
3
March, 2020
2
May, 2019
1
March, 2019
Available data
429
bam
373
bigWig
278
tsv
213
fastq
135
bed narrowPeak
62
bigBed narrowPeak
27
bed bed3+
20
bed broadPeak
16
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
6
txt
3
bedpe bed3+
3
hic
1
bedpe
Organism
422
Homo sapiens
Biosample type
429
tissue
273
primary cell
65
cell line
24
in vitro differentiated cells
Organ
498
connective tissue
440
adipose tissue
429
pancreas
288
liver
226
brain
132
heart
114
limb
98
kidney
87
blood vessel
87
vasculature
66
bone element
44
musculature of body
42
nerve
34
artery
24
spleen
18
ureter
8
skeleton
3
eye
1
pituitary gland
0
epithelium
Project
427
AMP
2
T1D
Genome assembly (visualization)
397
hg19
383
GRCh38
Lab
404
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
429 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
FAIRE-seq
small RNA-seq
tissue
islet of Langerhans
266
30
38
1
6
1
body of pancreas
2
35
4
4
2
2
pancreas
1
16
2
2
1
endocrine pancreas
16
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