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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
DNase-seq
18
ChIP-seq
2
ATAC-seq
Assay category
25
DNA accessibility
18
DNA binding
Target of assay
16
histone
16
histone modification
10
broad histone mark
6
narrow histone mark
2
RNA binding protein
2
transcription factor
Date released
18
June, 2019
12
August, 2017
5
October, 2019
4
November, 2017
2
November, 2018
1
March, 2019
1
October, 2017
Available data
791
bam
713
bigWig
500
fastq
439
tsv
292
bed narrowPeak
145
bigBed narrowPeak
80
zippedFastqFolder
50
bed bed3+
43
bed broadPeak
29
bigBed broadPeak
23
tagAlign
12
bed bedMethyl
12
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
txt
3
cool
3
hdf5
1
bedpe
1
tar
Organism
37
Homo sapiens
Biosample type
22
primary cell
20
tissue
1
cell line
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
43
AMP
Genome assembly (visualization)
34
GRCh38
34
hg19
Lab
41
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
43 results
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DNase-seq
ChIP-seq
ATAC-seq
primary cell
endothelial cell of umbilical vein
2
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 8 more…
tissue
islet of Langerhans
6
2
pancreas
2
6
body of pancreas
4
cell line
Panc1
1
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