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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
172
ChIP-seq
79
single cell RNA-seq
56
ATAC-seq
10
WGBS
3
DNase-seq
2
FAIRE-seq
Assay category
172
DNA binding
79
Transcription
61
DNA accessibility
10
DNA methylation
Target of assay
116
histone
116
histone modification
59
broad histone mark
57
narrow histone mark
35
control
21
transcription factor
12
RNA binding protein
1
chromatin remodeller
Date released
79
August, 2017
46
September, 2018
39
July, 2018
36
April, 2018
35
October, 2018
19
December, 2017
18
May, 2022
11
September, 2017
7
August, 2020
7
November, 2018
6
February, 2021
6
November, 2017
5
October, 2017
3
August, 2018
3
September, 2020
1
June, 2018
1
March, 2019
Available data
446
bam
374
bigWig
322
fastq
292
bed narrowPeak
145
bigBed narrowPeak
96
tsv
80
zippedFastqFolder
50
bed bed3+
43
bed broadPeak
29
bigBed broadPeak
23
tagAlign
12
bed bedMethyl
12
bigBed bedMethyl
9
hic
8
bedpe bed3+
3
cool
3
hdf5
1
bedpe
1
tar
Organism
315
Homo sapiens
Biosample type
187
primary cell
116
tissue
19
in vitro differentiated cells
Organ
460
liver
293
pancreas
176
epithelium
101
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
24
spleen
23
embryo
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
306
AMP
16
HPAP
Genome assembly (visualization)
270
hg19
262
GRCh38
Lab
286
AMP-T2D consortium
18
Kyle Gaulton, UCSD
16
Klaus Kaestner, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
9
inconsistent ontology term
Audit category:
54
missing controlled_by
Audit category:
10
inconsistent control read length
1
inconsistent assembly
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
322 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
13
12
13
6
pancreatic beta cell
13
12
10
pancreatic ductal cell
13
9
4
pancreatic endocrine cell
23
pancreatic acinar cell
8
9
5
+ See 9 more…
tissue
islet of Langerhans
28
6
20
1
1
body of pancreas
33
4
2
2
pancreas
16
2
1
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
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