Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
308
total RNA-seq
119
ChIP-seq
90
ATAC-seq
11
snATAC-seq
10
DNase-seq
5
pCHi-C
4
Hi-C
4
MeRIP-seq
4
WGBS
2
FAIRE-seq
2
RRBS
2
small RNA-seq
Assay category
310
Transcription
119
DNA binding
113
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
75
histone
75
histone modification
41
broad histone mark
34
narrow histone mark
29
control
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
147
August, 2017
120
July, 2018
51
October, 2018
49
February, 2023
39
November, 2019
37
May, 2021
24
May, 2022
24
October, 2019
9
March, 2020
8
January, 2021
7
June, 2019
7
November, 2018
6
April, 2018
6
July, 2019
6
September, 2017
5
March, 2019
5
October, 2017
4
November, 2020
2
August, 2021
2
February, 2020
2
May, 2019
1
August, 2022
Available data
432
bam
376
bigWig
280
tsv
213
fastq
153
bed narrowPeak
65
bigBed narrowPeak
30
bed bed3+
23
bed broadPeak
16
tagAlign
9
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
bedpe bed3+
3
hic
1
bedpe
Organism
554
Homo sapiens
Biosample type
561
tissue
351
primary cell
92
cell line
3
in vitro differentiated cells
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
531
AMP
30
T1D
Genome assembly (visualization)
443
hg19
389
GRCh38
Lab
498
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
561 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
MeRIP-seq
WGBS
FAIRE-seq
RRBS
small RNA-seq
tissue
islet of Langerhans
298
52
59
7
1
4
3
4
1
1
body of pancreas
3
35
4
4
2
2
pancreas
2
16
4
2
1
1
2
1
1
retina
3
15
3
endocrine pancreas
16
+ See 1 more…
See all biosamples
Download