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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
total RNA-seq
75
ChIP-seq
74
single cell RNA-seq
71
ATAC-seq
47
WGBS
3
DNase-seq
3
Hi-C
1
RRBS
Assay category
159
Transcription
75
DNA binding
74
DNA accessibility
48
DNA methylation
3
3D chromatin structure
Target of assay
60
histone
60
histone modification
33
narrow histone mark
27
broad histone mark
14
control
1
RNA binding protein
1
transcription factor
Date released
80
May, 2022
72
September, 2018
41
August, 2017
37
February, 2023
37
July, 2018
33
April, 2018
19
September, 2020
8
June, 2019
7
August, 2020
6
February, 2021
5
July, 2019
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
258
fastq
206
bam
202
bigWig
112
tsv
80
zippedFastqFolder
74
bed narrowPeak
28
bigBed narrowPeak
3
bed bed3+
3
bed broadPeak
3
bedpe bed3+
3
bigBed broadPeak
3
cool
3
hic
1
bed bedMethyl
1
bigBed bedMethyl
Organism
359
Homo sapiens
Biosample type
778
tissue
359
primary cell
158
cell line
4
in vitro differentiated cells
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
207
AMP
152
HPAP
Genome assembly (visualization)
202
GRCh38
195
hg19
Lab
207
AMP-T2D consortium
152
Klaus Kaestner, Upenn
Audit category:
11
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
BIOSAMPLE
ASSAY
359 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
primary cell
pancreatic alpha cell
52
13
12
35
31
1
pancreatic beta cell
21
13
12
23
16
1
pancreatic acinar cell
4
8
12
9
1
pancreatic ductal cell
4
13
10
4
pancreatic endocrine cell
23
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