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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
427
total RNA-seq
239
ChIP-seq
208
ATAC-seq
133
single cell RNA-seq
88
DNase-seq
51
WGBS
17
snATAC-seq
9
Hi-C
5
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
small RNA-seq
3
snDrop-seq
2
RNA microarray
2
STARR-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
9
3D chromatin structure
Date released
3
October, 2022
2
August, 2021
1
March, 2019
1
March, 2020
1
November, 2019
1
October, 2019
Available data
7
hic
6
bedpe bed3+
3
cool
1
bed bed3+
1
bedpe
1
bigWig
1
hdf5
Organism
9
Homo sapiens
Biosample type
5
tissue
3
primary cell
1
cell line
Organ
8
pancreas
7
epithelium
6
musculature of body
5
blood vessel
5
vasculature
4
limb
4
liver
3
brain
3
heart
2
vein
1
connective tissue
1
kidney
Project
6
AMP
3
HPAP
Genome assembly (visualization)
8
hg19
1
GRCh38
Lab
3
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
3
audit script error
inconsistent ontology term
Audit category:
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
9 results
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Hi-C
tissue
islet of Langerhans
3
kidney
1
pancreas
1
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
Panc1
1
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