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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
total RNA-seq
24
ChIP-seq
5
single cell RNA-seq
1
ATAC-seq
1
DNase-seq
Assay category
41
Transcription
24
DNA binding
2
DNA accessibility
Target of assay
14
histone
14
histone modification
10
transcription factor
8
narrow histone mark
7
recombinant protein
6
broad histone mark
3
RNA binding protein
Date released
26
February, 2021
13
November, 2019
10
October, 2019
5
July, 2018
5
May, 2021
3
June, 2019
3
March, 2020
2
May, 2019
Available data
67
bam
66
bigWig
41
tsv
26
bed narrowPeak
5
bigBed narrowPeak
5
fastq
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
67
Homo sapiens
Biosample type
57
cell line
10
primary cell
Organ
57
epithelium
52
pancreas
15
kidney
11
connective tissue
8
musculature of body
4
embryo
4
heart
2
brain
1
adipose tissue
1
limb
1
liver
1
vasculature
Project
63
AMP
4
T1D
Genome assembly (visualization)
71
hg19
67
GRCh38
Lab
67
AMP-T2D consortium
Audit category:
67
inconsistent ontology term
BIOSAMPLE
ASSAY
67 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
cell line
EndoC_BH1
33
13
1
RCC 7860 HIF1a re-expression
1
3
RCC 7860 HIF2a over-expression
1
2
RCC 7860 vector
1
2
primary cell
epithelial cell of proximal tubule
2
1
co-expressing pancreatic endocrine cell
2
kidney epithelial cell
2
unclassified pancreatic endocrine cell
2
pancreatic acinar cell
1
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