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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
total RNA-seq
5
single cell RNA-seq
2
pCHi-C
1
ATAC-seq
Assay category
41
Transcription
1
DNA accessibility
Date released
26
February, 2021
5
July, 2018
5
March, 2020
4
May, 2021
3
October, 2019
1
November, 2019
Available data
74
bam
68
bigWig
44
tsv
26
bed narrowPeak
5
bigBed narrowPeak
5
fastq
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bedpe bed3+
1
bigBed bedMethyl
1
bigBed broadPeak
1
hic
Organism
44
Homo sapiens
Biosample type
39
cell line
5
primary cell
Organ
39
pancreas
36
epithelium
5
kidney
2
embryo
1
brain
1
connective tissue
1
stomach
1
urinary bladder
Project
42
AMP
2
T1D
Genome assembly (visualization)
42
hg19
41
GRCh38
Lab
44
AMP-T2D consortium
Audit category:
44
inconsistent ontology term
7
audit script error
BIOSAMPLE
ASSAY
44 results
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total RNA-seq
single cell RNA-seq
pCHi-C
ATAC-seq
cell line
EndoC_BH1
33
1
RCC 7860 vector
1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 VHL
1
primary cell
co-expressing pancreatic endocrine cell
2
unclassified pancreatic endocrine cell
2
pancreatic acinar cell
1
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