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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
DNase-seq
21
ChIP-seq
1
Hi-C
Assay category
85
DNA accessibility
21
DNA binding
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
7
transcription factor
6
broad histone mark
6
narrow histone mark
2
RNA binding protein
2
control
Date released
82
June, 2019
19
August, 2017
2
November, 2018
2
October, 2019
2
September, 2017
Available data
833
bam
754
bigWig
471
fastq
441
tsv
397
bed narrowPeak
195
bigBed narrowPeak
107
bed bed3+
99
bed broadPeak
85
bigBed broadPeak
80
zippedFastqFolder
68
txt
64
xls
19
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
8
hic
7
bedpe bed3+
csv
3
cool
1
bedpe
1
hdf5
Organism
107
Homo sapiens
Biosample type
95
tissue
10
primary cell
2
cell line
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
27
connective tissue
21
epithelium
18
ureter
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
107
AMP
Genome assembly (visualization)
107
GRCh38
98
hg19
Lab
107
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
1
inconsistent assembly
files.file_type!
csv
BIOSAMPLE
ASSAY
107 results
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Clear Filters
DNase-seq
ChIP-seq
Hi-C
tissue
islet of Langerhans
21
kidney
13
renal cortex interstitium
11
renal pelvis
10
right kidney
10
+ See 7 more…
primary cell
glomerular visceral epithelial cell
2
kidney tubule cell
2
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
kidney capillary endothelial cell
1
+ See 3 more…
cell line
Panc1
1
1
See all biosamples
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