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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
6
total RNA-seq
4
DNase-seq
3
ATAC-seq
Assay category
34
DNA binding
7
DNA accessibility
6
Transcription
Target of assay
15
histone
15
histone modification
12
control
8
narrow histone mark
7
broad histone mark
7
recombinant protein
7
transcription factor
Date released
188
August, 2017
157
July, 2018
134
August, 2021
104
May, 2022
85
June, 2019
72
September, 2018
61
May, 2021
56
February, 2023
55
November, 2019
53
October, 2018
47
October, 2019
47
September, 2023
40
February, 2021
39
April, 2018
23
April, 2019
19
September, 2020
17
July, 2019
16
March, 2020
14
May, 2023
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
7
May, 2019
7
November, 2018
5
March, 2019
5
October, 2017
3
August, 2018
3
December, 2019
3
October, 2022
1
August, 2022
1
February, 2020
1
June, 2018
Available data
42
bam
30
bigWig
23
bed narrowPeak
8
bigBed narrowPeak
6
tsv
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
hdf5
Organism
47
Homo sapiens
Biosample type
29
cell line
11
primary cell
7
tissue
Organ
86
brain
69
limb
47
blood vessel
47
vasculature
42
nerve
35
epithelium
30
kidney
26
artery
21
eye
21
vein
17
pancreas
8
heart
7
liver
4
connective tissue
4
gonad
4
ovary
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
47
AMP
Genome assembly (visualization)
29
GRCh38
29
hg19
Lab
47
AMP-T2D consortium
Audit category:
13
inconsistent ontology term
files.file_type!
hdf5
BIOSAMPLE
ASSAY
47 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
cell line
Panc1
13
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
glomerular visceral epithelial cell
1
1
primary cell
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
tissue
kidney
4
islet of Langerhans
3
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