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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
270
total RNA-seq
102
ChIP-seq
75
DNase-seq
7
ATAC-seq
4
WGBS
3
FAIRE-seq
3
small RNA-seq
Assay category
273
Transcription
102
DNA binding
85
DNA accessibility
4
DNA methylation
Target of assay
85
histone
85
histone modification
47
broad histone mark
38
narrow histone mark
17
transcription factor
8
RNA binding protein
Date released
130
August, 2017
116
July, 2018
72
June, 2019
40
October, 2018
36
May, 2021
19
November, 2019
18
April, 2019
7
July, 2019
7
November, 2018
6
April, 2018
5
March, 2020
5
October, 2017
2
October, 2019
1
May, 2019
Available data
527
bam
464
bigWig
287
tsv
276
bed narrowPeak
213
fastq
149
bigBed narrowPeak
95
bed bed3+
88
bed broadPeak
74
bigBed broadPeak
68
txt
64
xls
16
tagAlign
7
bed bedMethyl
7
bigBed bedMethyl
5
csv
4
hic
3
bedpe bed3+
1
bedpe
Organism
458
Homo sapiens
Biosample type
464
tissue
220
primary cell
68
cell line
2
in vitro differentiated cells
Organ
481
connective tissue
423
adipose tissue
373
pancreas
265
liver
202
brain
157
heart
91
kidney
91
limb
70
blood vessel
70
vasculature
58
bone element
57
musculature of body
31
nerve
27
artery
18
ureter
16
spleen
3
eye
1
pituitary gland
Project
462
AMP
2
T1D
Genome assembly (visualization)
457
hg19
453
GRCh38
Lab
463
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
464 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
FAIRE-seq
small RNA-seq
tissue
islet of Langerhans
266
29
1
3
1
body of pancreas
2
26
4
4
2
2
kidney
20
13
1
pancreas
1
13
2
2
1
endocrine pancreas
14
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