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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
413
total RNA-seq
270
ChIP-seq
163
ATAC-seq
130
single cell RNA-seq
89
DNase-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
8
Hi-C
6
RRBS
3
FAIRE-seq
3
pCHi-C
3
small RNA-seq
3
snDrop-seq
2
RNA microarray
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
163
DNA accessibility
Date released
August, 2021
57
May, 2022
20
November, 2019
16
May, 2021
14
September, 2018
11
February, 2023
11
May, 2023
7
August, 2020
5
October, 2017
5
September, 2017
4
March, 2019
4
March, 2020
3
August, 2017
3
October, 2019
3
September, 2020
Available data
65
bam
64
bed narrowPeak
56
fastq
41
bigWig
39
zippedFastqFolder
22
bigBed narrowPeak
2
bed broadPeak
2
tsv
Organism
163
Homo sapiens
Biosample type
73
tissue
71
primary cell
19
cell line
Organ
152
pancreas
103
epithelium
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
23
connective tissue
23
liver
12
bone element
12
skeleton
11
kidney
8
limb
6
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
103
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
71
hg19
70
GRCh38
Lab
69
AMP-T2D consortium
49
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
11
Katalin Susztak, Upenn
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
month_released!
August, 2021
BIOSAMPLE
ASSAY
163 results
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Clear Filters
ATAC-seq
tissue
islet of Langerhans
58
kidney
11
body of pancreas
4
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
cell line
EndoC_BH1
19
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