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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
182
total RNA-seq
147
ChIP-seq
56
ATAC-seq
32
single cell RNA-seq
10
WGBS
3
DNase-seq
2
FAIRE-seq
Assay category
214
Transcription
147
DNA binding
61
DNA accessibility
10
DNA methylation
Target of assay
100
histone
100
histone modification
52
broad histone mark
48
narrow histone mark
30
control
17
transcription factor
8
RNA binding protein
Date released
168
August, 2017
72
September, 2018
July, 2018
37
February, 2023
37
October, 2018
34
April, 2018
24
May, 2022
19
September, 2020
11
September, 2017
7
August, 2020
7
November, 2018
6
February, 2021
5
October, 2017
3
August, 2018
1
June, 2018
1
March, 2019
Available data
680
bam
601
bigWig
432
fastq
397
bed narrowPeak
288
tsv
195
bigBed narrowPeak
107
bed bed3+
99
bed broadPeak
85
bigBed broadPeak
80
zippedFastqFolder
68
txt
64
xls
19
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
8
hic
7
bedpe bed3+
5
csv
3
cool
1
bedpe
1
hdf5
Organism
425
Homo sapiens
Biosample type
221
primary cell
211
tissue
Organ
465
liver
432
pancreas
224
epithelium
99
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
0
kidney
Project
363
AMP
69
HPAP
Genome assembly (visualization)
324
hg19
318
GRCh38
Lab
337
AMP-T2D consortium
69
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
month_released!
July, 2018
BIOSAMPLE
ASSAY
432 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
52
13
13
5
6
pancreatic beta cell
21
13
10
3
pancreatic ductal cell
4
13
4
6
pancreatic endocrine cell
23
pancreatic acinar cell
4
8
5
4
+ See 3 more…
tissue
islet of Langerhans
101
28
20
1
1
body of pancreas
33
4
2
2
pancreas
16
2
1
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