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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
87
total RNA-seq
85
ChIP-seq
74
single cell RNA-seq
71
ATAC-seq
47
WGBS
12
DNase-seq
3
Hi-C
3
RRBS
Assay category
161
Transcription
85
DNA binding
83
DNA accessibility
50
DNA methylation
3
3D chromatin structure
Target of assay
68
histone
68
histone modification
36
narrow histone mark
32
broad histone mark
15
control
2
RNA binding protein
2
transcription factor
Date released
80
May, 2022
72
September, 2018
41
August, 2017
37
February, 2023
37
July, 2018
33
April, 2018
19
September, 2020
13
June, 2019
11
October, 2019
7
August, 2020
7
July, 2019
6
February, 2021
5
May, 2019
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
258
fastq
225
bam
220
bigWig
114
tsv
90
bed narrowPeak
80
zippedFastqFolder
38
bigBed narrowPeak
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
3
bed bedMethyl
3
bedpe bed3+
3
bigBed bedMethyl
3
cool
3
hic
Organism
382
Homo sapiens
Biosample type
804
tissue
382
primary cell
111
cell line
3
in vitro differentiated cells
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
230
AMP
152
HPAP
Genome assembly (visualization)
220
GRCh38
210
hg19
Lab
230
AMP-T2D consortium
152
Klaus Kaestner, Upenn
Audit category:
13
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
382 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
primary cell
pancreatic alpha cell
52
13
12
35
31
1
pancreatic beta cell
21
13
12
23
16
1
pancreatic acinar cell
4
8
12
9
1
pancreatic ductal cell
4
13
10
4
pancreatic endocrine cell
23
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