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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
353
total RNA-seq
83
single cell RNA-seq
6
WGBS
3
pCHi-C
3
small RNA-seq
3
snDrop-seq
2
ATAC-seq
2
RNA microarray
Assay category
439
Transcription
6
DNA methylation
2
DNA accessibility
Date released
155
July, 2018
89
August, 2017
42
May, 2021
41
April, 2018
40
February, 2021
26
September, 2018
20
November, 2019
11
July, 2019
8
March, 2020
7
December, 2019
6
October, 2019
3
August, 2018
2
February, 2023
2
October, 2018
1
August, 2021
1
February, 2020
1
June, 2018
Available data
902
bam
814
bigWig
500
fastq
455
tsv
452
bed narrowPeak
232
bigBed narrowPeak
118
bed bed3+
111
bed broadPeak
97
bigBed broadPeak
80
zippedFastqFolder
68
txt
64
xls
23
tagAlign
13
bed bedMethyl
13
bigBed bedMethyl
10
hic
8
bedpe bed3+
5
csv
3
cool
3
hdf5
1
bedpe
1
tar
Organism
455
Homo sapiens
Biosample type
289
tissue
124
primary cell
40
cell line
2
in vitro differentiated cells
Organ
478
connective tissue
417
pancreas
401
adipose tissue
174
liver
168
heart
156
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
447
AMP
6
HPAP
2
T1D
Genome assembly (visualization)
432
hg19
430
GRCh38
Lab
448
AMP-T2D consortium
6
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
45
inconsistent ontology term
7
audit script error
BIOSAMPLE
ASSAY
455 results
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total RNA-seq
single cell RNA-seq
WGBS
pCHi-C
small RNA-seq
snDrop-seq
ATAC-seq
RNA microarray
tissue
islet of Langerhans
267
1
body of pancreas
3
2
kidney
5
metanephros
1
1
pancreas
1
1
+ See 6 more…
primary cell
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 14 more…
cell line
EndoC_BH1
33
1
RCC 7860 vector
1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 VHL
1
+ See 1 more…
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
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