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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
ChIP-seq
156
ATAC-seq
152
total RNA-seq
65
single cell RNA-seq
56
WGBS
17
snATAC-seq
12
DNase-seq
10
MeRIP-seq
5
pCHi-C
4
STARR-seq
3
snDrop-seq
2
Capture-C
2
Hi-C
2
RNA microarray
1
CRISPR genome editing followed by sgRNA sequencing
1
whole genome sequencing assay
Assay category
56
DNA methylation
Date released
41
May, 2022
6
February, 2021
5
November, 2018
3
August, 2017
1
July, 2019
Available data
41
zippedFastqFolder
12
fastq
6
tsv
5
bam
5
bed bedMethyl
5
bigBed bedMethyl
5
bigWig
Organism
56
Homo sapiens
Biosample type
47
primary cell
8
tissue
1
cell line
Organ
51
pancreas
47
epithelium
8
heart
6
adipose tissue
6
connective tissue
5
liver
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
0
kidney
Project
47
HPAP
9
AMP
Genome assembly (visualization)
5
GRCh38
Lab
47
Klaus Kaestner, Upenn
9
AMP-T2D consortium
assembly!
hg19
BIOSAMPLE
ASSAY
56 results
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WGBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
liver
3
body of pancreas
2
pancreas
2
right lobe of liver
1
cell line
HepG2
1
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