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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
59
total RNA-seq
22
ChIP-seq
8
single cell RNA-seq
6
snATAC-seq
4
STARR-seq
3
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
70
DNA accessibility
67
Transcription
22
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
6
histone
6
histone modification
5
control
4
narrow histone mark
2
broad histone mark
1
RNA binding protein
Date released
315
November, 2017
242
August, 2017
194
May, 2020
169
August, 2021
157
July, 2018
144
May, 2022
87
June, 2019
72
September, 2018
63
December, 2017
61
May, 2021
60
November, 2018
56
February, 2023
55
November, 2019
55
October, 2019
53
October, 2018
47
September, 2023
43
February, 2021
39
April, 2018
27
July, 2019
23
April, 2019
19
March, 2020
19
September, 2020
14
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2021
7
August, 2020
7
May, 2019
5
January, 2019
5
March, 2019
5
October, 2017
3
August, 2018
3
October, 2022
2
February, 2020
1
August, 2022
1
December, 2018
1
June, 2018
Available data
81
bed narrowPeak
64
xls
57
txt
17
bigWig
10
tsv
4
bam
4
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
169
Homo sapiens
Biosample type
130
tissue
35
cell line
4
primary cell
Organ
130
kidney
92
heart
35
liver
8
embryo
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
4
pancreas
2
artery
1
adipose tissue
Project
169
AMP
Genome assembly (visualization)
67
GRCh38
19
hg19
Lab
128
Katalin Susztak, Upenn
35
Bing Ren, UCSD
6
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
BIOSAMPLE
ASSAY
169 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney
64
49
8
6
1
islet of Langerhans
1
1
cell line
HepG2
9
18
2
1
1
EndoC_BH1
2
HEK293T
2
primary cell
hepatocyte
4
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