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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
13
ChIP-seq
8
DNase-seq
2
FAIRE-seq
Assay category
74
DNA accessibility
13
DNA binding
Target of assay
histone
127
histone modification
68
broad histone mark
59
narrow histone mark
13
transcription factor
8
RNA binding protein
Date released
21
November, 2019
18
May, 2022
14
September, 2018
10
October, 2018
6
August, 2017
5
September, 2017
4
June, 2019
4
October, 2017
3
November, 2018
1
May, 2021
1
October, 2019
Available data
552
bam
481
bigWig
418
tsv
371
fastq
87
bed narrowPeak
80
zippedFastqFolder
42
bigBed narrowPeak
17
bed bed3+
9
bed broadPeak
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
4
tagAlign
3
cool
1
bedpe
1
hdf5
Organism
87
Homo sapiens
Biosample type
61
tissue
22
primary cell
3
cell line
1
in vitro differentiated cells
Organ
361
liver
153
kidney
94
heart
87
pancreas
67
vasculature
64
blood vessel
63
epithelium
54
artery
53
blood
53
bodily fluid
44
limb
40
connective tissue
36
brain
33
musculature of body
32
eye
18
ureter
11
adipose tissue
8
bone element
8
skeleton
8
spleen
3
embryo
3
nerve
3
vein
0
large intestine
Project
87
AMP
Genome assembly (visualization)
85
hg19
67
GRCh38
Lab
69
AMP-T2D consortium
18
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
target.investigated_as!
histone
BIOSAMPLE
ASSAY
87 results
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ATAC-seq
ChIP-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
37
1
1
1
body of pancreas
4
9
4
pancreas
1
2
1
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
cell line
EndoC_BH1
1
1
Panc1
1
in vitro differentiated cells
pancreatic PP cell
1
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