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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
total RNA-seq
21
ATAC-seq
13
ChIP-seq
6
WGBS
2
Hi-C
1
pCHi-C
1
single cell RNA-seq
Assay category
47
Transcription
21
DNA accessibility
13
DNA binding
6
DNA methylation
2
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
315
November, 2017
242
August, 2017
194
May, 2020
157
July, 2018
144
May, 2022
72
September, 2018
63
December, 2017
61
May, 2021
60
November, 2018
56
February, 2023
55
November, 2019
53
October, 2018
39
April, 2018
39
August, 2021
35
February, 2021
25
October, 2019
19
September, 2020
17
March, 2020
16
July, 2019
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
6
June, 2019
5
December, 2019
5
January, 2019
5
March, 2019
5
October, 2017
3
August, 2018
3
October, 2022
2
February, 2020
2
May, 2019
1
August, 2022
1
December, 2018
1
June, 2018
Available data
80
bam
57
bigWig
52
tsv
32
bed narrowPeak
6
fastq
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bed3+
1
csv
Organism
90
Homo sapiens
Biosample type
44
cell line
40
tissue
6
primary cell
Organ
456
connective tissue
387
adipose tissue
150
bone element
87
pancreas
66
artery
66
blood vessel
66
heart
66
vasculature
48
epithelium
8
kidney
8
skeleton
6
limb
3
liver
Project
84
AMP
6
HPAP
Genome assembly (visualization)
81
hg19
78
GRCh38
Lab
84
AMP-T2D consortium
6
Klaus Kaestner, Upenn
Audit category:
42
inconsistent ontology term
1
inconsistent replicate
BIOSAMPLE
ASSAY
90 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
WGBS
Hi-C
pCHi-C
single cell RNA-seq
cell line
EndoC_BH1
27
1
13
1
HepG2
1
1
tissue
islet of Langerhans
19
19
1
liver
1
primary cell
pancreatic alpha cell
6
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