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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
111
ATAC-seq
73
total RNA-seq
52
ChIP-seq
47
WGBS
11
snATAC-seq
10
MeRIP-seq
8
Hi-C
2
Capture-C
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
122
DNA accessibility
73
Transcription
52
DNA binding
49
DNA methylation
8
3D chromatin structure
Target of assay
53
control
9
histone
9
histone modification
broad histone mark
5
nucleotide modification
4
narrow histone mark
Date released
104
May, 2022
56
February, 2023
25
August, 2017
24
November, 2019
18
May, 2021
16
September, 2020
11
October, 2018
10
November, 2020
9
October, 2019
8
January, 2021
6
February, 2021
6
September, 2017
5
March, 2019
4
August, 2021
4
July, 2018
4
March, 2020
3
October, 2022
2
July, 2019
1
August, 2022
1
February, 2020
1
May, 2019
Available data
619
bam
bigWig
419
fastq
417
tsv
146
bed narrowPeak
80
zippedFastqFolder
61
bigBed narrowPeak
23
bed bed3+
13
bed broadPeak
11
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
316
Homo sapiens
Biosample type
154
primary cell
128
tissue
35
cell line
1
in vitro differentiated cells
Organ
318
pancreas
223
kidney
221
epithelium
169
heart
157
liver
101
bone element
86
connective tissue
79
vasculature
78
blood vessel
56
artery
55
eye
54
brain
46
adipose tissue
31
limb
24
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
5
gonad
5
ovary
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
148
AMP
142
HPAP
28
T1D
Genome assembly (visualization)
51
hg19
24
GRCh38
Lab
142
Klaus Kaestner, Upenn
108
AMP-T2D consortium
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
28
inconsistent ontology term
4
audit script error
target.investigated_as!
broad histone mark
files.file_type!
bigWig
BIOSAMPLE
ASSAY
318 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
Capture-C
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
primary cell
pancreatic alpha cell
22
42
6
31
1
pancreatic beta cell
13
11
6
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
55
18
17
7
4
3
1
pancreas
1
3
4
1
1
1
body of pancreas
1
9
endocrine pancreas
2
cell line
EndoC_BH1
17
2
6
1
2
1
Panc1
6
in vitro differentiated cells
pancreatic PP cell
1
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