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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
2
MeRIP-seq
Assay category
46
DNA binding
Target of assay
139
histone
139
histone modification
72
broad histone mark
67
narrow histone mark
48
control
18
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
21
August, 2017
11
October, 2018
6
October, 2019
6
September, 2017
2
November, 2020
1
May, 2019
1
May, 2021
Available data
40
bam
30
fastq
3
tagAlign
2
bed bed3+
Organism
47
Homo sapiens
Biosample type
29
tissue
12
primary cell
6
cell line
1
in vitro differentiated cells
Organ
108
liver
48
pancreas
33
connective tissue
31
brain
24
adipose tissue
22
vasculature
21
blood vessel
21
epithelium
19
heart
17
limb
11
nerve
9
artery
8
spleen
7
kidney
6
blood
6
bodily fluid
5
embryo
5
musculature of body
2
vein
1
eye
Project
48
AMP
Genome assembly (visualization)
2
GRCh38
2
hg19
Lab
46
AMP-T2D consortium
2
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
inconsistent ontology term
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
48 results
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ChIP-seq
MeRIP-seq
tissue
islet of Langerhans
13
2
body of pancreas
9
pancreas
3
endocrine pancreas
2
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
cell line
Panc1
6
in vitro differentiated cells
pancreatic PP cell
1
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