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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ChIP-seq
30
total RNA-seq
5
WGBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
Hi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
122
DNA binding
31
Transcription
5
DNA methylation
1
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
93
control
20
histone
20
histone modification
12
broad histone mark
9
transcription factor
8
narrow histone mark
4
recombinant protein
3
RNA binding protein
Date released
49
November, 2017
34
August, 2017
24
May, 2020
20
May, 2022
16
August, 2021
13
December, 2017
4
November, 2018
1
December, 2018
1
February, 2020
1
February, 2021
1
July, 2019
1
March, 2020
Available data
95
bam
75
fastq
43
tagAlign
12
tsv
5
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
1
vcf
Organism
165
Homo sapiens
Biosample type
93
tissue
71
cell line
1
in vitro differentiated cells
primary cell
Organ
214
kidney
202
heart
165
liver
127
pancreas
122
brain
90
connective tissue
88
bone element
65
adipose tissue
65
blood vessel
65
vasculature
48
artery
34
epithelium
26
eye
26
limb
21
musculature of body
20
lung
12
nerve
11
spleen
8
embryo
6
blood
6
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
0
pericardium
Project
165
AMP
Genome assembly (visualization)
hg19
520
GRCh38
Lab
129
AMP-T2D consortium
20
Karen Mohlke, UNC
16
Bing Ren, UCSD
Audit category:
1
missing controlled_by
biosample_type!
primary cell
assembly!
hg19
BIOSAMPLE
ASSAY
165 results
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ChIP-seq
total RNA-seq
WGBS
STARR-seq
pCHi-C
DNase-seq
Hi-C
single cell RNA-seq
whole genome sequencing assay
tissue
liver
62
20
3
1
1
right lobe of liver
3
1
1
1
cell line
HepG2
56
9
1
2
1
1
1
in vitro differentiated cells
hepatocyte
1
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