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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
93
single cell RNA-seq
35
ATAC-seq
14
WGBS
5
pCHi-C
5
total RNA-seq
3
DNase-seq
1
RNA microarray
Assay category
114
DNA binding
98
Transcription
38
DNA accessibility
14
DNA methylation
Target of assay
65
histone
65
histone modification
44
control
40
broad histone mark
25
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
93
August, 2021
42
August, 2017
40
May, 2024
36
February, 2023
18
October, 2018
10
April, 2019
8
July, 2019
6
May, 2019
5
February, 2020
5
June, 2019
4
March, 2020
2
February, 2021
1
August, 2018
Available data
101
tsv
78
bed narrowPeak
51
bigWig
50
bam
23
fastq
9
tagAlign
8
bed bedMethyl
8
bigBed bedMethyl
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
1
bedpe bed3+
Organism
269
Homo sapiens
Biosample type
264
tissue
3
primary cell
2
cell line
1
in vitro differentiated cells
Organ
288
pancreas
225
kidney
213
epithelium
205
heart
166
liver
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
0
pericardium
Project
270
AMP
Genome assembly (visualization)
691
GRCh38
hg19
Lab
230
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
assembly!
hg19
BIOSAMPLE
ASSAY
270 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
pCHi-C
total RNA-seq
DNase-seq
RNA microarray
tissue
left cardiac atrium
40
18
coronary artery
2
35
1
subcutaneous abdominal adipose tissue
35
3
heart left ventricle
6
18
4
1
heart right ventricle
2
17
2
1
+ See 14 more…
primary cell
cardiac fibroblast
2
1
cell line
smooth muscle cell of the coronary artery
2
in vitro differentiated cells
white fat cell
1
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