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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
465
total RNA-seq
202
ChIP-seq
93
single cell RNA-seq
53
ATAC-seq
29
DNase-seq
14
WGBS
5
pCHi-C
3
Hi-C
3
small RNA-seq
2
RRBS
1
RNA microarray
Assay category
561
Transcription
202
DNA binding
82
DNA accessibility
16
DNA methylation
3
3D chromatin structure
Target of assay
127
histone
127
histone modification
77
broad histone mark
50
narrow histone mark
42
control
33
transcription factor
15
RNA binding protein
Date released
452
February, 2021
93
August, 2021
57
April, 2019
57
August, 2017
40
May, 2024
37
February, 2023
31
July, 2019
28
June, 2019
23
October, 2018
21
May, 2019
9
October, 2019
8
March, 2020
5
February, 2020
3
May, 2021
1
August, 2018
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
639
bam
637
bigWig
563
tsv
198
bed narrowPeak
98
bigBed narrowPeak
44
fastq
33
bed bed3+
30
bed broadPeak
29
bigBed broadPeak
14
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
bedpe bed3+
3
hic
Organism
869
Homo sapiens
Biosample type
802
tissue
66
cell line
primary cell
2
in vitro differentiated cells
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
870
AMP
Genome assembly (visualization)
678
GRCh38
603
hg19
Lab
830
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
biosample_type!
primary cell
BIOSAMPLE
ASSAY
870 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
RNA microarray
tissue
adipose tissue
382
2
3
3
1
heart left ventricle
3
35
18
2
3
4
1
1
1
left cardiac atrium
40
18
1
coronary artery
1
5
36
2
heart
4
14
1
18
1
1
1
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cell line
smooth muscle cell of the coronary artery
52
6
8
in vitro differentiated cells
cardiac fibroblast
1
white fat cell
1
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