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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
256
ChIP-seq
32
DNase-seq
6
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
256
DNA binding
35
DNA accessibility
13
Transcription
Target of assay
167
histone
167
histone modification
106
narrow histone mark
61
broad histone mark
54
transcription factor
36
control
13
RNA binding protein
10
chromatin remodeller
Date released
83
October, 2019
78
November, 2017
30
June, 2019
28
May, 2019
27
December, 2018
18
January, 2019
17
November, 2018
14
July, 2019
9
October, 2017
Available data
304
bam
278
bigWig
257
bed narrowPeak
181
bigBed narrowPeak
118
tagAlign
81
fastq
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
27
tsv
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
304
Homo sapiens
Biosample type
226
tissue
60
cell line
18
primary cell
Organ
689
pancreas
681
liver
593
connective tissue
442
adipose tissue
317
epithelium
243
brain
211
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
304
AMP
Genome assembly (visualization)
270
GRCh38
210
hg19
Lab
304
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
inconsistent control
Audit category:
3
missing controlled_by
BIOSAMPLE
ASSAY
304 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
brain
13
14
1
layer of hippocampus
20
temporal lobe
15
1
1
angular gyrus
15
caudate nucleus
14
1
+ See 71 more…
cell line
GM12878
60
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
+ See 3 more…
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