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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
173
ChIP-seq
36
DNase-seq
6
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
Assay category
173
DNA binding
38
DNA accessibility
13
Transcription
Target of assay
169
histone
169
histone modification
108
narrow histone mark
61
broad histone mark
4
RNA binding protein
4
transcription factor
3
control
Date released
78
October, 2019
63
November, 2017
36
June, 2019
25
May, 2019
13
July, 2019
7
October, 2017
2
November, 2018
Available data
222
bam
221
bigWig
207
bed narrowPeak
132
bigBed narrowPeak
82
tagAlign
50
bed broadPeak
42
bigBed broadPeak
36
bed bed3+
15
fastq
13
tsv
1
tagAlign bed3+
Organism
224
Homo sapiens
Biosample type
206
tissue
18
primary cell
Organ
635
pancreas
566
connective tissue
531
liver
424
adipose tissue
294
epithelium
266
heart
217
brain
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
224
AMP
Genome assembly (visualization)
224
GRCh38
200
hg19
Lab
224
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
BIOSAMPLE
ASSAY
224 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
tissue
brain
11
14
1
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
caudate nucleus
12
1
+ See 74 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
retinal pigment epithelial cell
2
1
cerebellar granule cell
2
+ See 4 more…
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