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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
8
ATAC-seq
8
total RNA-seq
4
Hi-C
1
RRBS
1
WGBS
Assay category
18
DNA binding
8
DNA accessibility
8
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
17
control
1
histone
1
histone modification
1
narrow histone mark
Date released
23
October, 2019
7
July, 2019
6
February, 2021
3
February, 2020
1
May, 2019
Available data
81
bam
58
bed narrowPeak
58
bigWig
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
8
tsv
2
bed bedMethyl
2
bigBed bedMethyl
Organism
40
Homo sapiens
Biosample type
39
tissue
1
primary cell
Organ
807
pancreas
616
connective tissue
461
adipose tissue
418
epithelium
412
liver
276
heart
247
kidney
159
bone element
149
vasculature
147
blood vessel
147
brain
116
artery
55
eye
38
limb
37
musculature of body
33
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
5
gonad
5
ovary
5
vein
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
40
AMP
Genome assembly (visualization)
14
GRCh38
14
hg19
Lab
40
AMP-T2D consortium
target.investigated_as!
broad histone mark
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
RRBS
WGBS
tissue
tibial nerve
11
1
5
tibial artery
5
1
1
gastrocnemius medialis
1
4
muscle of leg
1
1
distal epiphysis of femur
1
+ See 7 more…
primary cell
pericardium fibroblast
1
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