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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
total RNA-seq
ChIP-seq
26
ATAC-seq
9
DNase-seq
6
WGBS
5
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
481
Transcription
35
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Date released
455
February, 2021
18
July, 2019
14
February, 2023
8
August, 2017
6
June, 2019
6
November, 2020
5
August, 2021
4
October, 2019
2
April, 2018
2
February, 2020
2
July, 2018
2
March, 2020
2
May, 2021
1
August, 2018
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
495
bigWig
491
bam
478
tsv
17
bed narrowPeak
16
bed bed3+
13
bigBed narrowPeak
11
fastq
9
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
531
Homo sapiens
Biosample type
474
tissue
30
in vitro differentiated cells
27
primary cell
1
stem cell
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
531
AMP
1
T1D
Genome assembly (visualization)
513
hg19
491
GRCh38
Lab
527
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
532 results
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total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
Capture-C
Hi-C
RNA microarray
RRBS
tissue
adipose tissue
382
3
3
1
bone tissue
58
subcutaneous adipose tissue
7
1
1
1
omental fat pad
5
1
2
1
subcutaneous abdominal adipose tissue
3
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in vitro differentiated cells
adipocyte
5
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
primary cell
osteoblast
5
2
1
1
cardiac fibroblast
3
1
pancreatic stellate cell
4
brain pericyte
1
1
mesenchymal stem cell of adipose
1
1
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stem cell
mesenchymal stem cell
1
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