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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
ChIP-seq
3
DNase-seq
3
single cell RNA-seq
2
Hi-C
Assay category
3
DNA accessibility
3
DNA binding
3
Transcription
2
3D chromatin structure
Target of assay
4
control
1
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
1
transcription factor
Date released
5
July, 2019
3
June, 2019
3
November, 2017
Available data
11
bigWig
9
bam
5
bed bed3+
5
bed broadPeak
5
bed narrowPeak
5
bigBed broadPeak
5
bigBed narrowPeak
3
fastq
3
tsv
2
hdf5
Organism
11
Homo sapiens
Biosample type
tissue
11
primary cell
Organ
epithelium
441
pancreas
430
liver
137
connective tissue
103
vasculature
97
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
55
kidney
37
embryo
22
vein
21
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
0
pituitary gland
Project
11
AMP
Genome assembly (visualization)
11
hg19
8
GRCh38
Lab
11
AMP-T2D consortium
biosample_type!
tissue
organ_slims!
epithelium
BIOSAMPLE
ASSAY
11 results
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ChIP-seq
DNase-seq
single cell RNA-seq
Hi-C
primary cell
astrocyte of the cerebellum
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
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