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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
36
DNase-seq
9
ATAC-seq
7
total RNA-seq
1
WGBS
Assay category
67
DNA binding
45
DNA accessibility
7
Transcription
3D chromatin structure
1
DNA methylation
Target of assay
50
histone
50
histone modification
34
broad histone mark
17
control
16
narrow histone mark
Date released
71
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
3
February, 2020
1
July, 2019
Available data
115
bam
93
bed narrowPeak
92
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign
Organism
120
Homo sapiens
Biosample type
120
tissue
Organ
937
pancreas
787
liver
683
connective tissue
516
epithelium
491
adipose tissue
390
heart
353
kidney
283
brain
231
vasculature
225
blood vessel
159
bone element
141
artery
118
limb
90
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
120
AMP
Genome assembly (visualization)
97
GRCh38
97
hg19
Lab
120
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
esophagus
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
120 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
WGBS
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
islet of Langerhans
1
1
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