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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
14
total RNA-seq
2
DNase-seq
2
Hi-C
1
ATAC-seq
1
FAIRE-seq
1
GRO-seq
Assay category
40
DNA binding
14
Transcription
4
DNA accessibility
2
3D chromatin structure
Target of assay
28
histone
28
histone modification
15
narrow histone mark
13
broad histone mark
9
control
3
transcription factor
Date released
23
October, 2019
13
December, 2017
13
February, 2018
8
August, 2021
2
May, 2021
1
January, 2018
1
March, 2020
Available data
57
bam
45
bigWig
28
bed narrowPeak
27
fastq
14
tsv
13
bigBed narrowPeak
5
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tagAlign
1
tar
Organism
61
Homo sapiens
Biosample type
29
in vitro differentiated cells
22
primary cell
8
cell line
2
tissue
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
61
AMP
Genome assembly (visualization)
47
hg19
42
GRCh38
1
hg18
Lab
61
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
BIOSAMPLE
ASSAY
61 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
ATAC-seq
FAIRE-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
cell line
H1-hESC
8
tissue
islet of Langerhans
1
pituitary gland
1
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