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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
total RNA-seq
3
ChIP-seq
3
RRBS
2
DNase-seq
Assay category
6
Transcription
3
DNA binding
3
DNA methylation
2
DNA accessibility
Target of assay
3
control
Date released
7
July, 2019
5
October, 2019
1
June, 2019
1
May, 2019
Available data
31
bam
28
bigWig
bed narrowPeak
16
bigBed narrowPeak
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
6
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
14
Homo sapiens
Biosample type
147
tissue
14
primary cell
11
cell line
Organ
300
epithelium
278
pancreas
22
connective tissue
16
vasculature
14
blood vessel
14
kidney
10
brain
9
vein
8
blood
8
bodily fluid
8
liver
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
0
pituitary gland
Project
14
AMP
Genome assembly (visualization)
9
hg19
6
GRCh38
Lab
14
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
14 results
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total RNA-seq
ChIP-seq
RRBS
DNase-seq
primary cell
epithelial cell of proximal tubule
1
2
1
kidney epithelial cell
1
1
1
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
renal cortical epithelial cell
1
1
glomerular endothelial cell
1
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