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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
36
DNase-seq
10
snATAC-seq
9
ATAC-seq
9
single cell RNA-seq
7
total RNA-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
67
DNA binding
55
DNA accessibility
16
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
50
histone
50
histone modification
34
broad histone mark
17
control
16
narrow histone mark
Date released
71
October, 2019
32
June, 2019
19
April, 2020
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
March, 2020
Available data
115
bam
93
bed narrowPeak
92
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
8
tsv
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign
Organism
143
Homo sapiens
Biosample type
144
tissue
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
125
AMP
19
LungMap
Genome assembly (visualization)
97
GRCh38
97
hg19
Lab
125
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
144 results
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ChIP-seq
DNase-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of leg
7
13
1
lung
10
9
1
muscle of arm
17
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