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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ATAC-seq
19
total RNA-seq
6
ChIP-seq
5
pCHi-C
4
DNase-seq
1
RRBS
Assay category
33
DNA accessibility
19
Transcription
6
DNA binding
1
DNA methylation
Target of assay
4
histone
4
histone modification
4
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
23
October, 2019
7
June, 2019
1
February, 2020
1
July, 2019
1
March, 2020
Available data
34
bed narrowPeak
8
bam
7
bigWig
6
bigBed narrowPeak
6
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign
Organism
64
Homo sapiens
Biosample type
59
tissue
5
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
64
AMP
Genome assembly (visualization)
35
hg19
7
GRCh38
Lab
64
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
64 results
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ATAC-seq
total RNA-seq
ChIP-seq
pCHi-C
DNase-seq
RRBS
tissue
islet of Langerhans
2
14
2
4
retina
15
3
3
pigmented layer of retina
12
2
bladder (urinary bladder)
1
pituitary gland
1
primary cell
retinal pigment epithelial cell
3
1
1
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