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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
ChIP-seq
60
total RNA-seq
56
ATAC-seq
9
DNase-seq
6
single cell RNA-seq
3
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
96
DNA binding
66
DNA accessibility
66
Transcription
3
3D chromatin structure
Target of assay
69
histone
69
histone modification
45
broad histone mark
24
narrow histone mark
20
control
7
transcription factor
3
RNA binding protein
Date released
74
February, 2021
50
May, 2019
47
October, 2019
43
February, 2023
July, 2019
6
August, 2021
5
June, 2019
4
March, 2020
3
February, 2020
Available data
176
bam
137
bigWig
133
bed narrowPeak
77
bigBed narrowPeak
63
tsv
11
bed broadPeak
11
bigBed broadPeak
9
bed bed3+
6
tagAlign
4
bed bed3
4
txt
3
hic
2
bedpe bed3+
1
tar
Organism
232
Homo sapiens
Biosample type
142
tissue
66
cell line
24
primary cell
Organ
940
pancreas
781
liver
666
connective tissue
511
epithelium
479
adipose tissue
368
heart
343
kidney
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
232
AMP
Genome assembly (visualization)
185
GRCh38
159
hg19
Lab
232
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
brain
month_released!
July, 2019
BIOSAMPLE
ASSAY
232 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
coronary artery
5
1
35
2
tibial artery
23
1
1
2
aorta
13
1
4
1
1
ascending aorta
16
1
1
thoracic aorta
16
+ See 13 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
kidney capillary endothelial cell
1
smooth muscle cell of the brain vasculature
1
See all biosamples
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