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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
13
ATAC-seq
4
total RNA-seq
2
WGBS
1
DNase-seq
1
pCHi-C
Assay category
20
DNA binding
14
DNA accessibility
4
Transcription
2
DNA methylation
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
9
November, 2018
8
February, 2021
8
February, 2023
7
December, 2018
7
January, 2019
1
March, 2020
1
October, 2017
Available data
32
bam
24
fastq
22
bed narrowPeak
16
bigWig
13
bigBed narrowPeak
4
bed bed3
4
txt
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
41
Homo sapiens
Biosample type
41
tissue
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
ovary
2
intestine
2
pericardium
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
41
AMP
Genome assembly (visualization)
26
hg19
24
GRCh38
Lab
41
AMP-T2D consortium
organ_slims!
ovary
pituitary gland
BIOSAMPLE
ASSAY
41 results
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ChIP-seq
ATAC-seq
total RNA-seq
WGBS
DNase-seq
pCHi-C
tissue
spleen
20
1
2
1
1
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
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