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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
402
total RNA-seq
23
ChIP-seq
17
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
405
Transcription
23
DNA binding
19
DNA accessibility
Target of assay
18
control
5
RNA binding protein
5
transcription factor
Date released
394
February, 2021
August, 2017
23
October, 2018
12
July, 2019
9
February, 2023
2
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
433
bam
408
bigWig
401
tsv
26
fastq
18
bed narrowPeak
8
bigBed narrowPeak
4
bed bed3
4
txt
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
449
Homo sapiens
Biosample type
447
tissue
2
primary cell
1
in vitro differentiated cells
Organ
758
pancreas
737
liver
559
connective tissue
495
epithelium
434
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
70
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
450
AMP
Genome assembly (visualization)
423
hg19
416
GRCh38
Lab
450
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
August, 2017
BIOSAMPLE
ASSAY
450 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
3
1
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
1
2
visceral abdominal adipose tissue
3
acetabular part of hip bone
1
1
+ See 12 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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