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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ATAC-seq
28
ChIP-seq
6
total RNA-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
53
DNA accessibility
28
DNA binding
8
Transcription
Target of assay
20
histone
20
histone modification
14
broad histone mark
7
control
6
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
43
February, 2023
26
October, 2019
8
February, 2021
5
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
July, 2019
Available data
70
bed narrowPeak
42
bam
27
bigWig
25
bigBed narrowPeak
4
bed bed3
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
tsv
4
txt
Organism
89
Homo sapiens
Biosample type
89
tissue
66
cell line
2
primary cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
89
AMP
Genome assembly (visualization)
70
GRCh38
39
hg19
Lab
89
AMP-T2D consortium
BIOSAMPLE
ASSAY
89 results
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ATAC-seq
ChIP-seq
total RNA-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
36
5
1
2
tibial artery
1
23
1
2
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
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