Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
total RNA-seq
56
ATAC-seq
34
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
60
DNA accessibility
60
Transcription
34
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
74
February, 2021
43
February, 2023
26
October, 2019
5
May, 2019
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
107
bam
82
bigWig
81
bed narrowPeak
56
tsv
25
bigBed narrowPeak
6
tagAlign
4
bed bed3
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
txt
Organism
154
Homo sapiens
Biosample type
88
tissue
66
cell line
Organ
940
pancreas
781
liver
666
connective tissue
511
epithelium
479
adipose tissue
343
kidney
328
heart
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
154
AMP
Genome assembly (visualization)
133
GRCh38
102
hg19
Lab
154
AMP-T2D consortium
month_released!
July, 2019
BIOSAMPLE
ASSAY
154 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
1
35
5
2
tibial artery
1
1
23
2
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 10 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
See all biosamples
Download