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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
14
ATAC-seq
8
snATAC-seq
4
total RNA-seq
2
WGBS
2
pCHi-C
1
DNase-seq
Assay category
80
DNA binding
23
DNA accessibility
4
Transcription
2
DNA methylation
Target of assay
57
transcription factor
14
control
10
RNA binding protein
10
chromatin remodeller
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
34
December, 2018
25
January, 2019
24
November, 2018
8
February, 2021
8
February, 2023
8
January, 2021
2
March, 2020
1
January, 2018
1
October, 2017
Available data
92
bam
84
fastq
76
bed narrowPeak
71
bigWig
67
bigBed narrowPeak
4
bed bed3
4
txt
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
111
Homo sapiens
Biosample type
61
cell line
42
tissue
8
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
103
AMP
8
T1D
Genome assembly (visualization)
81
hg19
78
GRCh38
Lab
103
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
BIOSAMPLE
ASSAY
111 results
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ChIP-seq
ATAC-seq
snATAC-seq
total RNA-seq
WGBS
pCHi-C
DNase-seq
cell line
GM12878
60
1
tissue
spleen
20
1
2
1
1
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
+ See 9 more…
primary cell
peripheral blood mononuclear cell
8
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