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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
12
ATAC-seq
4
total RNA-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
21
DNA binding
15
DNA accessibility
4
Transcription
2
3D chromatin structure
Target of assay
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
2
control
Date released
25
October, 2019
8
February, 2021
8
February, 2023
2
March, 2020
Available data
28
bam
21
bed narrowPeak
15
bigWig
13
bigBed narrowPeak
4
bed bed3
4
bed broadPeak
4
bigBed broadPeak
4
txt
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
1
tsv
Organism
43
Homo sapiens
Biosample type
22
primary cell
21
tissue
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
43
AMP
Genome assembly (visualization)
29
hg19
20
GRCh38
Lab
43
AMP-T2D consortium
Audit category:
1
audit script error
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
Hi-C
FAIRE-seq
pCHi-C
primary cell
endothelial cell of umbilical vein
17
2
2
1
tissue
islet of Langerhans
4
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
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