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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ATAC-seq
13
ChIP-seq
4
total RNA-seq
2
WGBS
2
pCHi-C
1
DNase-seq
Assay category
14
DNA accessibility
13
DNA binding
4
Transcription
2
DNA methylation
Target of assay
7
control
6
transcription factor
3
other context
3
other post-translational modification
Date released
9
November, 2018
8
February, 2021
8
February, 2023
7
December, 2018
January, 2019
2
March, 2020
1
October, 2017
Available data
25
bam
17
fastq
16
bed narrowPeak
10
bigWig
7
bigBed narrowPeak
4
bed bed3
4
txt
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
35
Homo sapiens
Biosample type
35
tissue
Organ
946
pancreas
786
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
51
blood
51
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
35
AMP
Genome assembly (visualization)
20
hg19
18
GRCh38
Lab
35
AMP-T2D consortium
month_released!
January, 2019
BIOSAMPLE
ASSAY
35 results
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ATAC-seq
ChIP-seq
total RNA-seq
WGBS
pCHi-C
DNase-seq
tissue
spleen
1
13
2
1
1
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
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