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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ATAC-seq
23
total RNA-seq
10
snATAC-seq
9
single cell RNA-seq
5
pCHi-C
3
DNase-seq
2
ChIP-seq
Assay category
53
DNA accessibility
32
Transcription
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
39
February, 2023
21
October, 2019
19
April, 2020
8
February, 2021
3
June, 2019
1
February, 2020
1
March, 2020
Available data
38
bed narrowPeak
11
bam
6
tsv
4
bed bed3
4
txt
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
3
bigWig
Organism
91
Homo sapiens
Biosample type
92
tissue
5
primary cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
73
AMP
19
LungMap
Genome assembly (visualization)
42
hg19
11
GRCh38
Lab
73
AMP-T2D consortium
19
Xin Sun, UCSD
BIOSAMPLE
ASSAY
92 results
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ATAC-seq
total RNA-seq
snATAC-seq
single cell RNA-seq
pCHi-C
DNase-seq
ChIP-seq
tissue
islet of Langerhans
1
14
4
2
retina
15
3
3
lung
10
9
1
pigmented layer of retina
12
2
acetabular part of hip bone
1
1
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