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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ATAC-seq
40
ChIP-seq
28
total RNA-seq
6
DNase-seq
4
pCHi-C
1
RRBS
Assay category
47
DNA accessibility
40
DNA binding
28
Transcription
1
DNA methylation
Target of assay
27
histone
27
histone modification
16
broad histone mark
12
control
11
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
63
October, 2019
39
February, 2023
8
February, 2021
7
June, 2019
2
February, 2020
1
July, 2019
Available data
68
bed narrowPeak
57
bam
37
bigWig
32
bigBed narrowPeak
10
tsv
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
4
bed bed3
4
txt
1
bed bedMethyl
1
bigBed bedMethyl
Organism
120
Homo sapiens
Biosample type
115
tissue
5
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
120
AMP
Genome assembly (visualization)
77
hg19
45
GRCh38
Lab
120
AMP-T2D consortium
BIOSAMPLE
ASSAY
120 results
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ATAC-seq
ChIP-seq
total RNA-seq
DNase-seq
pCHi-C
RRBS
tissue
tibial nerve
1
35
5
2
islet of Langerhans
1
2
14
4
retina
15
3
3
pigmented layer of retina
12
2
acetabular part of hip bone
1
1
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primary cell
retinal pigment epithelial cell
3
1
1
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