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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
50
ATAC-seq
11
total RNA-seq
6
single cell RNA-seq
5
DNase-seq
2
WGBS
2
pCHi-C
1
Hi-C
Assay category
77
DNA binding
55
DNA accessibility
17
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
58
histone
58
histone modification
36
broad histone mark
22
narrow histone mark
16
control
3
RNA binding protein
3
transcription factor
Date released
50
May, 2019
43
February, 2023
30
October, 2019
8
February, 2021
7
July, 2019
6
August, 2021
4
March, 2020
3
February, 2020
3
June, 2019
Available data
108
bed narrowPeak
95
bam
70
bigWig
62
bigBed narrowPeak
15
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
4
bed bed3
4
txt
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
154
Homo sapiens
Biosample type
154
tissue
66
cell line
37
primary cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
154
AMP
Genome assembly (visualization)
113
GRCh38
82
hg19
Lab
154
AMP-T2D consortium
BIOSAMPLE
ASSAY
154 results
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ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
DNase-seq
WGBS
pCHi-C
Hi-C
tissue
coronary artery
5
36
1
2
tibial artery
23
1
1
2
aorta
13
1
4
2
1
1
ascending aorta
16
2
1
thoracic aorta
16
1
2
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