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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
total RNA-seq
58
ATAC-seq
54
ChIP-seq
2
WGBS
2
single cell RNA-seq
1
pCHi-C
Assay category
62
Transcription
58
DNA accessibility
54
DNA binding
2
DNA methylation
Target of assay
26
histone
26
histone modification
18
broad histone mark
17
control
11
transcription factor
8
narrow histone mark
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
74
February, 2021
43
February, 2023
24
October, 2019
8
November, 2018
7
December, 2018
7
January, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
1
March, 2020
1
October, 2017
Available data
134
bam
101
bigWig
96
bed narrowPeak
59
tsv
38
bigBed narrowPeak
24
fastq
6
tagAlign
5
bed bed3+
5
bed broadPeak
bigBed broadPeak
4
bed bed3
4
txt
2
bed bedMethyl
2
bigBed bedMethyl
Organism
177
Homo sapiens
Biosample type
109
tissue
66
cell line
2
primary cell
Organ
939
pancreas
728
liver
675
connective tissue
502
epithelium
489
adipose tissue
363
heart
276
kidney
248
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
177
AMP
Genome assembly (visualization)
147
GRCh38
114
hg19
Lab
177
AMP-T2D consortium
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
177 results
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total RNA-seq
ATAC-seq
ChIP-seq
WGBS
single cell RNA-seq
pCHi-C
tissue
coronary artery
1
36
5
tibial artery
1
1
23
spleen
1
20
2
1
acetabular part of hip bone
1
1
ilium
1
1
+ See 11 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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