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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
12
ATAC-seq
4
total RNA-seq
2
DNase-seq
1
FAIRE-seq
1
Hi-C
Assay category
17
DNA binding
15
DNA accessibility
4
Transcription
1
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
20
October, 2019
8
February, 2021
8
February, 2023
1
March, 2020
Available data
28
bam
21
bed narrowPeak
15
bigWig
13
bigBed narrowPeak
4
bed bed3
4
bed broadPeak
4
bigBed broadPeak
4
txt
2
bed bed3+
1
bedpe bed3+
1
hic
1
tar
Organism
37
Homo sapiens
Biosample type
21
primary cell
16
tissue
Organ
942
pancreas
791
liver
684
connective tissue
519
epithelium
491
adipose tissue
353
heart
347
kidney
286
brain
235
vasculature
229
blood vessel
159
bone element
141
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
37
AMP
Genome assembly (visualization)
28
hg19
20
GRCh38
Lab
37
AMP-T2D consortium
Audit category:
audit script error
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
17
2
1
1
tissue
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
distal epiphysis
1
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